MmuEX6005060 @ mm9
Exon Skipping
Gene
ENSMUSG00000068335 | Dok1
Description
docking protein 1 [Source:MGI Symbol;Acc:MGI:893587]
Coordinates
chr6:82980928-82982622:-
Coord C1 exon
chr6:82982529-82982622
Coord A exon
chr6:82982225-82982409
Coord C2 exon
chr6:82980928-82982054
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTTCGTATGTGTTCTTCCAGGAT
3' ss Score
10.14
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
AAAGGCGGCTGGGCTTTGGCGCAGACGGAGAACCAACCTAAGTTTTCTGCCTTGGAGATGCTGGAGAATTCGCTGTACAGCCCCACCTGGGAAG
Seq A exon
GATCCCAGTTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACATACTGAGGGTGGAAGCTGAGAAGCTGACTCTCCTGACTTTGGGTGCGCAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGTCGCTATGGCCGGGACAAG
Seq C2 exon
GTAATGTTCTCCTTTGAAGCTGGTCGCCGCTGCCCCTCAGGCCCTGGGACCTTCACCTTCCAGACTTCTCAGGGAAATGACATCTTTCAGGCAGTTGAGGCTGCCATCCAGCAGCAGAAAGCCCAAGGAAAGGTGGGCCAGGCACAGGATATCCTCAGAACTGACTCCCATGATGGGGAGACAGAGGGGAAGACAGTTCCCCCTCCTGTTCCCCAGGACCCCCTGGGCAGCCCTCCAGCCCTATATGCGGAGCCTTTAGACTCCTTGCGAATTCCTCCAGGCCCTTCTCAGGACTCTGTATATTCAGACCCCCTGGGCAGCACCCCTGCTGGGGCAGGGGAAGGGGTGCATTCCAAGAAACCTCTCTATTGGGATTTGTATGGGCATGTGCAGCAGCAGTTACTGAAAACCAAGCTGACAGACTCCAAAGAGGACCCCATCTATGATGAACCTGAAGGCCTGGCCCCCGCCCCTCCCCGGGGCCTTTATGATCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068335-'2-6,'2-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.758
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.1)
A:
PF0217412=IRS=FE(58.7=100)
C2:
PF0217412=IRS=PD(38.5=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGGAGATGCTGGAGAA
R:
ACAGGAGGGGGAACTGTCTTC
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: