RnoEX6014002 @ rn6
Exon Skipping
Gene
ENSRNOG00000007412 | Dok1
Description
docking protein 1 [Source:RGD Symbol;Acc:1309499]
Coordinates
chr4:113864215-113865860:-
Coord C1 exon
chr4:113865767-113865860
Coord A exon
chr4:113865466-113865650
Coord C2 exon
chr4:113864215-113865295
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTGTGTTCTTCCAGGAT
3' ss Score
12.42
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
Exon sequences
Seq C1 exon
AAAGGCGGCTGGGCTTTGGCTCAGACGGAGAACCCACCTAAGTTTTCTGCCCTGGAGATGCTGGAGAATTCGCTGTACAGCCCCACCTGGGAAG
Seq A exon
GATCCCAATTCTGGGTAACCTCGCAGAAGACCGAGGCTTCTGAACGCTGCGGCTTGCAAGGCTCCTACGTACTGAGGGTAGAAGCTGAGAAGCTGACCCTTCTGACTTTGGGTGCACAGAGTCAAATCCTGGAGCCGCTCCTTTTCTGGCCCTACACTCTGTTGCGACGCTATGGCCGAGACAAG
Seq C2 exon
GTAATGTTCTCCTTTGAAGCGGGTCGCCGCTGCCCCTCTGGCCCTGGGACCTTCACCTTCCAGACTGCCCAGGGAAATGACATCTTTCAGGCAGTTGAGGCTGCTATCCAGCAGCAGAAAGCCCAAGGAAAGGTGGGACAGGGACAAGATATCACCAGAACTGACTCCCATGATGGGGAGACAGAGGGGAAGATGGCTCCCACTCCTGTTCCCCAGGAACCCCTGGGCAGCCCTCCAGCCCTATATGCAGAGCCTTTAGACTCCCTGCGAATTCCTCCAGGCCCTTCTCAGGACTCTTTGTATTCAGACCCCCTGGGCAGCACCCCTGCTGGGGCAGGGGAAGGGGTGCAGCGGAAGAAACCTCTCTATTGGGATTTGTATGGGCACGTGCAGCAGCAGTTGCTGAAAACCAAGCTGATAGACTCCAAAGAGGACCCCATCTATGATGAGCCTGAGGGCCTGGCCCCTGCCCCTCTCCGGGGCCTTTATGATCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007412-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.734
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(1.0=3.1)
A:
PF0217412=IRS=FE(58.7=100)
C2:
PF0217412=IRS=PD(38.5=14.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTCTGCCCTGGAGATGCT
R:
AGCCATCTTCCCCTCTGTCTC
Band lengths:
251-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]