DreEX6010501 @ danRer10
Exon Skipping
Gene
ENSDARG00000010752 | acsl4b
Description
acyl-CoA synthetase long-chain family member 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6493]
Coordinates
chr5:23023649-23026185:-
Coord C1 exon
chr5:23026046-23026185
Coord A exon
chr5:23023816-23023985
Coord C2 exon
chr5:23023649-23023723
Length
170 bp
Sequences
Splice sites
3' ss Seq
TAATTTTGTTTGTCTCTCAGGCT
3' ss Score
7.96
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAGATCATGGACCGAATCTGCAAGAATGTTAATGGGAAGCTGCAGGAGATGTCAGTCATAAAGAGGACTCTGTTTAAATTGGGTTTCGACTATAAACTACAGCAGGTGTCAAAAGGAGCCGATTCTCCTATGTGTGACAT
Seq A exon
GCTGTTCTTCAAGCAGGTGAATGTGCTTCTGGGAGGCTGTGTGCGCCGTATGTTGAGCGGAGGGGCTCCACTGTCTGCTTCCACACAGAGATTTATGAACGTGTGTTTCTGCCCCATTGCTGTGGGTTATGGCCTTACAGAGACGTGCGGAGCTGGCACTATATCAGACT
Seq C2 exon
CTTCTGATTACAGTACAGGACGAGTTGGAGCTCCTCTCATTTGCTCTGAAATAAAACTGCGAGACTGGCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010752-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.6=100)
A:
PF0050123=AMP-binding=FE(11.9=100)
C2:
PF0050123=AMP-binding=FE(5.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCATGGACCGAATCTGCA
R:
CAGGCCAGTCTCGCAGTTTTA
Band lengths:
211-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]