DreEX6010666 @ danRer10
Exon Skipping
Gene
ENSDARG00000029039 | zdhhc23a
Description
zinc finger, DHHC-type containing 23a [Source:ZFIN;Acc:ZDB-GENE-060526-38]
Coordinates
chr5:23778770-23787745:+
Coord C1 exon
chr5:23778770-23778891
Coord A exon
chr5:23784127-23784774
Coord C2 exon
chr5:23787578-23787745
Length
648 bp
Sequences
Splice sites
3' ss Seq
CCTCTATTTTTATTTATAAGGTT
3' ss Score
7.86
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
ATGAAACGAGAACGTTTTAAGCCACCAGAACCAGATGACCCTCTGTGCTGCTGTGGGGACATCGACCAGCAAAGGGAGTACTGCTGCTGTGACTGTGAAGAACTCGACGATGCCTGCGAAAG
Seq A exon
GTTACTCAGAGGAGAGCCAGACAAGCCAGACGTGTTTTCGCGTTTCATCTCTCGTATGGCTGATCGTTTGGGTGTGTCATGTTGCACCGTAGGACCTCTTCGACTGGAACTCTCTGTTTTACCTCCCATGGTTTTAATCCCTGGCCTGTTGCGAGTCGCAGCGATTAATTGCTTGTTGGGAGTTATAATCCTAACAGCGCTTCCACTACTGGTGCTTTGGTATTACTATATGACTCACAGAAGAAAAAGACGCACATTATTTTTCCTCAGTTTGGCACTTTTTTCCCTCGCCTACATGTACTATCTTTTCCTGACTGAGATCGTCCCCAGAGGAGATGTAACTCATCTGCAGGTGGTTACCGCAACGACGGGCATGATGCTGACGCTCATCTCCCTTGTGCGCACCAAACAGGGACCGGGCTTTGTCAAATCCCAGTCTTTAGCTCTGGGAATCAACAGTAGCCTTGCAACCAATCGAAGCACAAACTTAACATTAGACACAGACCTGCGTAATGGAGTCAGCCATTTAAAGGGAGAGAAGGATGTGAAGAAGAAGTGTCCTGTGTGCCAACTGGTGCGCCCACCAAGGGCGGGGCACTGCAGAATCTGTGGGGCATGTGTCCTACGAATGGACCACCACTGTGTTTG
Seq C2 exon
GATAAACAGCTGTGTAGGCCAAGCGAATCACAGACAGTTCATCTTGACGCTCCTTCTCTTCCTGCTGACATCATTCTATGGGATCAGCTTGGTTTTGCGGAGTATCTGTCCAAAACAGAGTCTGTTCACAGCCATGCTTTACTGCCCTGGAGTCTACAACCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029039-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF135671=DUF4131=WD(100=46.5),PF0152915=zf-DHHC=PU(46.9=41.5)
C2:
PF0152915=zf-DHHC=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAACGTTTTAAGCCACCA
R:
TGGTTGTAGACTCCAGGGCAG
Band lengths:
278-926
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]