DreEX6010740 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24559365-24560984:-
Coord C1 exon
chr5:24560904-24560984
Coord A exon
chr5:24560651-24560813
Coord C2 exon
chr5:24559365-24559451
Length
163 bp
Sequences
Splice sites
3' ss Seq
TAAACTCCATCACTGTGCAGGAA
3' ss Score
6.8
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCATCATGGTGCGTCTTCAGAGAGTTACCTTTCTTGCCCTTCACAACTATCTGGGCCTGACCACAGAACTTTTCAATCCG
Seq A exon
GAAAGTCAGGCTGTTCCTCTGGTGTCAGTGGCCGGTGTTGTAGGAGAGGCTGGTCAAGGCAGAGGGCCGCGCAGACACTCGCAGACAAATGAAGACGTGTCTGACAAAGTCCCACAGAGATCTTCAGACCATTACAGTGACACAAGTCACATGTCCAGAGAAG
Seq C2 exon
ATTGTGGAAAGCTCAATTGTACAGAGAGTCCGACGACTTTATTCAGGAAGTCTCGCTCACTGTCAACACCTTTAGAAAGTACACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.745 C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGTGCGTCTTCAGAGAGT
R:
CGTGTGTACTTTCTAAAGGTGTTGAC
Band lengths:
163-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]