GgaEX1044844 @ galGal4
Exon Skipping
Gene
ENSGALG00000008736 | PNPLA7
Description
patatin-like phospholipase domain-containing protein 7 [Source:RefSeq peptide;Acc:NP_001124214]
Coordinates
chr17:1601863-1603729:+
Coord C1 exon
chr17:1601863-1601943
Coord A exon
chr17:1602973-1603117
Coord C2 exon
chr17:1603646-1603729
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTTCACCTTCCTTTTTGCAGCAG
3' ss Score
10.11
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
ATCATCATGGTGAGGCTGCAGAGAGTGACATTCCTTGCCTTGCACAACTACCTTGGGCTGACTACTGAGCTCTTCAATTGT
Seq A exon
CAGAACCAAGCCATCCCACTGGTCTCTGTGGCAAGTGTCACATCTGGAGGAAGTTCAAGTAAAGCAGCAAAAAGACAAGTGTCCAGTGTATCAGAGGAGGAGCGTGGAGAGAAGTTTGAGAAATCTGGGGAAGCATCAGAAATGG
Seq C2 exon
ATACATTGAAGAATTCTGGTACAGAAAACCCTGAGCATATTTTCAGGAGAAGCCTTTCTTCACCCCCTTCTACAGAGACTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008736-'15-12,'15-10,16-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.612 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCATGGTGAGGCTGCAGAG
R:
AGAAGTCTCTGTAGAAGGGGGTG
Band lengths:
162-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]