HsaEX6064314 @ hg38
Exon Skipping
Gene
ENSG00000130653 | PNPLA7
Description
patatin like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:HGNC:24768]
Coordinates
chr9:137515379-137521716:-
Coord C1 exon
chr9:137521636-137521716
Coord A exon
chr9:137519917-137520043
Coord C2 exon
chr9:137515379-137515519
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTTCTTGTGTCCCAGGAG
3' ss Score
9.75
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCATCATGGTGCGGCTGCAGAGGGTGACCTTTCTGGCTCTGCACAACTACCTCGGCCTGACCACAGAGCTCTTCAACGCT
Seq A exon
GAGAGCCAGGCCATCCCTCTCGTGTCTGTAGCCAGTGTGGCTGCCGGGAAGGCCAAGAAGCAGGTGTTCTATGGCGAAGAAGAGCGGCTTAAAAAGCCACCGCGGCTCCAGGAGTCCTGTGACTCAG
Seq C2 exon
ATCACGGGGGCGGCCGCCCGGCAGCTGCTGGGCCCCTGCTGAAGAGGAGCCACTCCGTCCCCGCGCCTTCCATTCGCAAACAGATCTTGGAGGAGCTGGAGAAGCCCGGGGCAGGTGACCCTGACCCTTCGGCCCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-'17-23,'17-18,18-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.275 C2=0.848
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCATGGTGCGGCTGC
R:
CGAAGGGTCAGGGTCACC
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains