MmuEX1029121 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:24996789-24998759:+
Coord C1 exon
chr2:24996789-24996889
Coord A exon
chr2:24997227-24997350
Coord C2 exon
chr2:24998622-24998759
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTTCTCATCCTCCAGGAG
3' ss Score
10.71
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CAGTGGCTTCATTTACTGCTCTGTTCCGGTACCTAAAGCAAGAGCAGAGGAAGTTACTGTGAAACACACAAGTGAAGCCCCGACAGAACTCCTTCGAGTTG
Seq A exon
GAGAGCCAGGCCATCCCTCTCTTGTCAGTAGCAAGTGTGGCTGGACGAGCCAAGAGACAGATGTCATATGGTCCAGAGGAGCAGCTTGAGAGGTCCCTACGGCCCTCGGAGTTCAGCAGCTCAG
Seq C2 exon
ATCATGGGAGCAGCTGTGTGACAGTCTCTGGGCCTCTGCTGAAGAGGAGCTGCTCAGTGCCTCTGCCTTCTAACCATGGGGAGGTGGATGAGCTCAGACAGTCCCAGGGAAGTGGCTCTAACACTTCTGCCTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'25-23,'25-22,26-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.402 C2=0.495
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGCTTCATTTACTGCTCTGT
R:
GGAAGGCAGAAGTGTTAGAGCC
Band lengths:
235-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types