HsaEX6064314 @ hg19
Exon Skipping
Gene
ENSG00000130653 | PNPLA7
Description
patatin-like phospholipase domain containing 7 [Source:HGNC Symbol;Acc:24768]
Coordinates
chr9:140409831-140416168:-
Coord C1 exon
chr9:140416088-140416168
Coord A exon
chr9:140414369-140414495
Coord C2 exon
chr9:140409831-140409971
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTTCCTTCTTGTGTCCCAGGAG
3' ss Score
9.75
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATCATCATGGTGCGGCTGCAGAGGGTGACCTTTCTGGCTCTGCACAACTACCTCGGCCTGACCACAGAGCTCTTCAACGCT
Seq A exon
GAGAGCCAGGCCATCCCTCTCGTGTCTGTAGCCAGTGTGGCTGCCGGGAAGGCCAAGAAGCAGGTGTTCTATGGCGAAGAAGAGCGGCTTAAAAAGCCACCGCGGCTCCAGGAGTCCTGTGACTCAG
Seq C2 exon
ATCACGGGGGCGGCCGCCCGGCAGCTGCTGGGCCCCTGCTGAAGAGGAGCCACTCCGTCCCCGCGCCTTCCATTCGCAAACAGATCTTGGAGGAGCTGGAGAAGCCCGGGGCAGGTGACCCTGACCCTTCGGCCCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130653-'11-16,'11-13,12-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.305 C2=0.834
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCATGGTGCGGCTGC
R:
CGAAGGGTCAGGGTCACC
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)