DreEX6011092 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27771017-27773452:+
Coord C1 exon
chr5:27771017-27771112
Coord A exon
chr5:27773077-27773248
Coord C2 exon
chr5:27773321-27773452
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCTTTGGTCTCAGGTG
3' ss Score
10
5' ss Seq
TTGGTATGT
5' ss Score
7.12
Exon sequences
Seq C1 exon
GTGTGTATGGAAATCTTGGACACCTATTTGACCAAAGCCCAGAATCAAGGAGATGAAATAATACCATGGGGAAGTCTGAAATACCTAATTGGAGAG
Seq A exon
GTGATGTATGGCGGCAGGGTTATTGACAGCTTTGATCGTAGGATCCTCACAGTTTACACGGATGAATATCTGGGCGACTTCATCTTTGACACCTTCCAGCCCTTTCATTTCTTTCACAATGCAGATGTAGACTACAAGATCCCAGCACTTGGACCCAAGCAGGTTTACGTTG
Seq C2 exon
ATGAGATCGAGTCGCTGCCTCTTGCTAACACTGCAGAGGTGTTTGGTTTGCACCCTAATGCTGAGATTGGATATTACACTCAGGCTGCCCGGGACATGTGGACTCATCTTATTGAGCTCCAACCACAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'78-76,'78-75,79-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.3=100)
A:
PF0302810=Dynein_heavy=FE(8.0=100)
C2:
PF0302810=Dynein_heavy=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTATGGAAATCTTGGACACCT
R:
CTGTCTGTGGTTGGAGCTCAA
Band lengths:
228-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]