MmuEX6021039 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124828773-124830159:+
Coord C1 exon
chr5:124828773-124828868
Coord A exon
chr5:124829525-124829696
Coord C2 exon
chr5:124830028-124830159
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCACCCAGTCCTTCTTCAGGTC
3' ss Score
6.69
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTCTGTATGGAAATCCTAAACACGTACCTAACGAAAGCCTTCCAGCAGCGTGACCCTCGCATCCCCTGGGGCAGCCTCAAGTACCTTATTGGAGAG
Seq A exon
GTCATGTACGGAGGCCGAGCTATTGACAGCTTCGATCGGCGCATCCTCACCACGTATATGGATGAGTACTTGGGAGACTTCATCTTCGATACTTTTCAACCATTCCACTTCTTCCGGAACAAGGATGTGGACTATAAAATCCCCGTGGGTGACATAAAGGATAAATTTGTCG
Seq C2 exon
AAGCCATTGAGGCCCTCCCACTCGCCAACACACCAGAAGTGTTTGGTCTCCATTCCAATGCCGAGATTGGCTATTACACACAGGCAGCTCGAGACATGTGGGGTCATCTGCTGGAGCTGCAGCCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'77-93,'77-85,88-93=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.4=100)
A:
PF0302810=Dynein_heavy=FE(8.0=100)
C2:
PF0302810=Dynein_heavy=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTATGGAAATCCTAAACACGT
R:
CTCCAGCAGATGACCCCACAT
Band lengths:
212-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types