GgaEX0004162 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4858574-4859735:-
Coord C1 exon
chr15:4859640-4859735
Coord A exon
chr15:4858834-4859005
Coord C2 exon
chr15:4858574-4858705
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTAGTGTAATTATTTCTAGGTC
3' ss Score
6.64
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTCTGCATGGAAATTCTTCACACATATTTGACAAAAGCTTTCCAGCAAAACGATGATAAAATCCCTTGGAGCAGCCTCAAGTATCTTATTGGAGAG
Seq A exon
GTCATGTATGGTGGCCGTGCCATTGACAGCTTTGATCGTCGCATTCTGACTGTCTATATGGACGAGTACCTTGGTGATTTCATATTTGACACATTCCAAACATTTCATTTTTACAAAAATGATGAGGTTGATTACAGGATTCCCCAAGGGACTGTAAAAGATGACTTTGTTG
Seq C2 exon
TGGCAATAGAAAGTCTGCCCCTTGCTAATACTCCAGAAGTATTTGGTCTTCACGCCAATGCTGAGATTGGGTATTACACACAGGCAGTTCGTGGTATATGGTCTCATCTTCTCGAGCTGCAGCCTCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.3=100)
A:
PF0302810=Dynein_heavy=FE(7.9=100)
C2:
PF0302810=Dynein_heavy=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCATGGAAATTCTTCACACA
R:
GTTTGAGGCTGCAGCTCGAG
Band lengths:
226-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]