HsaEX6069920 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123929664-123931472:+
Coord C1 exon
chr12:123929664-123929759
Coord A exon
chr12:123930402-123930573
Coord C2 exon
chr12:123931341-123931472
Length
172 bp
Sequences
Splice sites
3' ss Seq
CTCAGGCCCTCTAATTTCAGGTC
3' ss Score
8.19
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GTCTGCATGGAAATTCTGAACACGTACTTAACGAAAGCCTTCCAGCAACGGGACCCAAGGATCCCGTGGGGCAGCCTCAAGTACCTAATTGGAGAG
Seq A exon
GTCATGTATGGAGGACGGGCCATCGACAGCTTTGATCGCCGCATCCTGACCATCTACATGGATGAGTACCTGGGGGACTTCATTTTTGATACTTTCCAGCCATTCCACTTCTTCCGGAACAAGGAAGTGGACTACAAAATCCCTGTTGGTGATGAAAAGGAGAAATTTGTTG
Seq C2 exon
AAGCCATCGAGGCCCTCCCGCTTGCCAACACGCCAGAAGTGTTTGGTCTCCACCCCAACGCTGAGATTGGCTATTACACGCAGGCGGCTCGAGACATGTGGGCTCACCTGCTGGAGCTGCAGCCTCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'98-96,'98-94,99-96=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(4.3=100)
A:
PF0302810=Dynein_heavy=FE(8.0=100)
C2:
PF0302810=Dynein_heavy=FE(6.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATGGAAATTCTGAACACGT
R:
CTGTCTGAGGCTGCAGCTC
Band lengths:
226-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains