GgaEX0004162 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4905212-4906397:-
Coord C1 exon
chr15:4906302-4906397
Coord A exon
chr15:4905496-4905667
Coord C2 exon
chr15:4905212-4905367
Length
172 bp
Sequences
Splice sites
3' ss Seq
ATTAGTGTAATTATTTCTAGGTC
3' ss Score
6.64
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
GTCTGCATGGAAATTCTTCACACATATTTGACAAAAGCTTTCCAGCAAAACGATGATAAAATCCCTTGGAGCAGCCTCAAGTATCTTATTGGAGAG
Seq A exon
GTCATGTATGGTGGCCGTGCCATTGACAGCTTTGATCGTCGCATTCTGACTGTCTATATGGACGAGTACCTTGGTGATTTCATATTTGACACATTCCAAACATTTCATTTTTACAAAAATGATGAGGTTGATTACAGGATTCCCCAAGGGACTGTAAAAGATGACTTTGTTG
Seq C2 exon
TGGCAATAGAAAGTCTGCCCCTTGCTAATACTCCAGAAGTATTTGGTCTTCACGCCAATGCTGAGATTGGGTATTACACACAGGCAGTTCGTGGTATATGGTCTCATCTTCTCGAGCTGCAGCCTCAAACAGGTACATCCACCACCACTTTGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(7.2=100)
A:
PF0302810=Dynein_heavy=FE(13.2=100)
C2:
PF0302810=Dynein_heavy=FE(10.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCATGGAAATTCTTCACACA
R:
AGTGGTGGTGGATGTACCTGT
Band lengths:
245-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]