DreEX6011100 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27761947-27762908:+
Coord C1 exon
chr5:27761947-27762094
Coord A exon
chr5:27762185-27762464
Coord C2 exon
chr5:27762679-27762908
Length
280 bp
Sequences
Splice sites
3' ss Seq
ATCTGTAATCGGTTTTGCAGATC
3' ss Score
8.46
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATGGGGATCTGAAGGTCTCCCTCCAGATGAGCTCTCAGTGCAGAACGGCATCCTGACTACCAGATCTAGCCGCTTCCCCTTGTGCATTGACCCCCAGCAGCAAGCGCTTAACTGGGTCAAAAAAAAGGAGGAGAAGAACAATCTGAAG
Seq A exon
ATCTCATCATTCAATGATCCAGACTTCTTGAAGGGGTTGGAGTTGGCTATTAAGTATGGATTCCCCTTCCTCTTCCAAGATGTGGATGAATATATCGATCCCGTAATTGACAACGTTCTTGAGAAGAATATAAAAGGGGCAGAGGGGCGCCAGGTTGTCGTACTTGGTGATAAGGAAGTTGACTACGATCCCAACTTCAAACTTTACCTCAATACCAAACTTGCAAACCCAAAGTTCTTACCTGCAGTATTTGGGAAGGCTATGGTTATCAATTACACCG
Seq C2 exon
TTACCCTGAAGGGATTGGAAGATCAGCTGCTGAGTGTTATTGTAGGATTTGAGCGAAAGGAGCTGGAGGAGCAAAGAGAAAGGCTTATTCTAGAGACTAGTGAGAACAAACGCTTGCTGAAAGATCTGGAGGACTCACTGCTGAGAGAGCTGGCCACCTCTACTGGAAACATGCTGGATAATGTTGAGCTCATACAGACTCTGGATGAAACCAAGTCCAAAGCCAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'67-65,'67-64,68-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.013
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(40.3=100)
C2:
PF127812=AAA_9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTCTCCCTCCAGATGAGC
R:
TGTTTCCAGTAGAGGTGGCCA
Band lengths:
308-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]