HsaEX6069930 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123914852-123917813:+
Coord C1 exon
chr12:123914852-123914999
Coord A exon
chr12:123916457-123916736
Coord C2 exon
chr12:123917584-123917813
Length
280 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTTCTCTTCCAGGTC
3' ss Score
14.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGG
Seq A exon
GTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGACAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTG
Seq C2 exon
TCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'85-79,'85-78,86-79
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(40.3=100)
C2:
PF127812=AAA_9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGGCATCCTCACCACC
R:
ACATTGTCCAGCATGTTCCCC
Band lengths:
292-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains