MmuEX6021049 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125298359-125300429:+
Coord C1 exon
chr5:125298359-125298506
Coord A exon
chr5:125299501-125299780
Coord C2 exon
chr5:125300200-125300429
Length
280 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCCTCTCACCTGCAGGTT
3' ss Score
12.46
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGGGGCTCCCAGGGCCTTCCCCCCGATGAGCTCTCGGTTCAGAATGGCATCCTTACAACCCGGGCCAGTCGCTTCCCACTCTGCATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAACGAAAAGAGGAGAAGAATAACCTACGG
Seq A exon
GTTGCTTCCTTCAATGACCCCGACTTCCTGAAGCAGCTCGAGATGTCCATAAAGTATGGGACCCCCTTCCTGTTCCACGACGTGGATGAGTACATCGACCCTGTGATTGACAGCGTCCTGGAGAAGAACATCAAGACCTCCCAAGGCCGCCAGTTCATCATTCTGGGGGACAAGGAGGTTGACTATGACTCGAATTTCCGGCTGTACCTCAATACCAAGCTGGCCAATCCTAGATACTCCCCATCGGTGTTTGGGAAGGCCATGGTCATCAACTATACTG
Seq C2 exon
TCACTCTGAAGGGCCTAGAGGACCAGCTGCTGAGTGTGCTGGTGGCCTATGAGAGGCGCGAGCTGGAGGAGCAGAGGGAGCACCTCATCCAAGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAGGACTCACTCCTGCGCGAGCTGGCCACGTCCACGGGCAACATGCTGGACAATGTGGAGCTGGTGCAGACCCTGGAAGAGACCAAGTCCAAAGCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'62-65,'62-64,63-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(40.3=100)
C2:
PF127812=AAA_9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCGGTTCAGAATGGCAT
R:
AGCTCCACATTGTCCAGCATG
Band lengths:
308-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: