GgaEX0004158 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4865623-4866785:-
Coord C1 exon
chr15:4866638-4866785
Coord A exon
chr15:4866149-4866428
Coord C2 exon
chr15:4865623-4865852
Length
280 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTATTCTCTTGCAGGTG
3' ss Score
13.34
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGGGTTTCTCAAGGATTGCCTCCAGATGAGCTCTCCGTCCAAAATGGCATTCTGACAACATATGCAAGCCGCTTCCCACTCTGTATTGACCCACAACAACAGGCTTTAAATTGGATTAAGAAGAAAGAAGAAAAAAATAACCTGAGG
Seq A exon
GTGTCTTCCTTTAATGACCCAGATTTCCTTAAACAACTGGAACTTGCCATAAAGTATGGAAGTCCCTTCTTGCTGCATGGTGTTGATGAATACATTGATCCTGTGATAGACAATGTCTTAGAGAAGAATATCAAAGTTGCACAAGGGCGAAAATTCATTGTCCTGGGTGACAAAGAGGTTGACTATGACAGTAACTTTAGATTGTACCTGAACACCAAATTAGCAAACCCAAAGTATTCTCCCGCTGTATTTGGGAAAGCTATGGTTATCAATTATACAG
Seq C2 exon
TTACGCTGAGGGGCCTGGAGGATCAATTGCTCAGTGTTATTACGGGTTTTGAAAGAAGGGAATTGGAAGAACAGAGAGAACATCTCATTCAGGAGACAAGTGACAATAAAAACTTGCTGAAAGATCTGGAAGACTCTCTCCTTCGGGAACTGACATCTTCCACAGGAAACATGTTGGACAACATAGACTTGGTGCAAACCATGGAGGAGACAAAATCCAAAGCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(40.3=100)
C2:
PF127812=AAA_9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAACATATGCAAGCCGCT
R:
GTCTCCTCCATGGTTTGCACC
Band lengths:
306-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]