HsaEX6069930 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124399399-124402360:+
Coord C1 exon
chr12:124399399-124399546
Coord A exon
chr12:124401004-124401283
Coord C2 exon
chr12:124402131-124402360
Length
280 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCCTTCTCTTCCAGGTC
3' ss Score
14.16
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
ATGGGGATCCCAGGGCCTTCCCCCCGATGAGCTCTCCGTTCAGAATGGCATCCTCACCACCCGGGCCAGCCGCTTCCCTCTGTGTATCGACCCCCAGCAGCAGGCCCTCAACTGGATCAAGAGAAAAGAGGAGAAGAACAATCTGCGG
Seq A exon
GTCGCTTCCTTTAATGACCCTGACTTCCTCAAGCAGCTAGAGATGTCCATAAAGTACGGGACCCCTTTCCTGTTCCGCGATGTTGATGAATACATCGATCCTGTGATTGACAACGTCTTAGAAAAAAATATAAAAGTCTCCCAAGGACGGCAGTTTATTATCCTGGGAGACAAGGAAGTGGACTATGATTCAAATTTCAGACTGTACCTGAACACCAAGCTGGCCAATCCCAGATATTCCCCATCCGTGTTTGGGAAAGCTATGGTGATCAATTACACTG
Seq C2 exon
TCACGCTGAAGGGCCTGGAGGACCAGCTGCTGAGCGTGCTGGTGGCTTACGAGAGGCGGGAGCTGGAGGAGCAGCGGGAGCACCTCATCCAGGAGACCAGCGAGAACAAGAACCTGCTCAAGGACCTGGAAGATTCCCTCCTTCGGGAGCTGGCCACGTCCACGGGGAACATGCTGGACAATGTGGACCTGGTGCACACCCTGGAGGAGACCAAATCCAAGGCAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'66-67,'66-66,67-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(21.2=100)
A:
PF127812=AAA_9=FE(40.3=100)
C2:
PF127812=AAA_9=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGGCATCCTCACCACC
R:
ACATTGTCCAGCATGTTCCCC
Band lengths:
292-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)