DreEX6011639 @ danRer10
Exon Skipping
Gene
ENSDARG00000079585 | pkn3
Description
protein kinase N3 [Source:ZFIN;Acc:ZDB-GENE-030131-1902]
Coordinates
chr5:31234105-31235044:-
Coord C1 exon
chr5:31234975-31235044
Coord A exon
chr5:31234798-31234889
Coord C2 exon
chr5:31234105-31234281
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCATTCGTGTCTCTCTGAAGGTC
3' ss Score
10.28
5' ss Seq
CAGGTGATG
5' ss Score
5.99
Exon sequences
Seq C1 exon
GAGGCAAGAAGGGATGCAGATGGAGGACTTTAACTGCATTTCTGTTTTAGGAAGAGGGCACTTTGGAAAG
Seq A exon
GTCCTTCTGGCTGAATTCAAGAGGACTGGGAAACTTTATGCCATCAAAGCCTTGAAAAAAGGGGATGTTGTGACCCGGGATGAAGTGGACAG
Seq C2 exon
TTTAATGTGTGAAAAGAGGATTTTTGAGACCATCAATGCGTCCCGACATCCTTTCCTGGTGAACCTGTACGGCTGCTTCCAGACGCCTGACCATGTGTGTTTTGTGATGGAATATTCTCCTGGAGGAGACCTGATGACCCACATCCACAACAACATCTTCTCTGAACGCCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079585-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=54.2)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGAAGGGATGCAGATGG
R:
AAAACACACATGGTCAGGCGT
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]