RnoEX6016256 @ rn6
Exon Skipping
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8652455-8653248:+
Coord C1 exon
chr3:8652455-8652518
Coord A exon
chr3:8652669-8652760
Coord C2 exon
chr3:8653072-8653248
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGACTTTTTCTGGTCCCTAGGTC
3' ss Score
11.43
5' ss Seq
CAGGTGTAT
5' ss Score
3.09
Exon sequences
Seq C1 exon
GAACCCCCCCCAACTTCAGGACTTCCGATGTTTGGCTGTGCTGGGCCGGGGACACTTTGGGAAG
Seq A exon
GTCCTCCTGGTCCAGTACAAAGGAACGGGAAAATACTACGCTATCAAGGCACTCAAGAAACAGGAAGTGCTAGGCCGGGATGAGATTGACAG
Seq C2 exon
CCTGTACTGTGAGAAGCGGATCCTGGAGACTGTGGGTCGTACAGGGCACCCGTTCTTGCTCTCTCTCCTTGCCTGCATCCAGACCTCCAGTCACGCCTGCTTTGTTACTGAGTTTCTGCCCGGAGGAGACCTCATGATGCAGATCCACGAGGATGTCTTTCCTGAGCCCCAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-'43-37,'43-36,44-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.1=59.1)
A:
PF0006920=Pkinase=FE(11.8=100)
C2:
PF0006920=Pkinase=FE(23.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCGATGTTTGGCTGT
R:
CCTCCGGGCAGAAACTCAGTA
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]