GgaEX0006433 @ galGal3
Exon Skipping
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5859273-5860530:+
Coord C1 exon
chr17:5859273-5859339
Coord A exon
chr17:5859904-5859995
Coord C2 exon
chr17:5860354-5860530
Length
92 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTGTTGTCTTTCAGGTA
3' ss Score
12.26
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAAAGGGGCAGTTCATCTTGAGGATTTTCACTGCATCGCCATGCTGGGACGTGGCCACTTTGGGAAG
Seq A exon
GTACTCTTGGCCCAATACAAAGCAACTGGGAAGCTGTATGCTATCAAAGCCTTGAAGAAAAAAGATATAATTAGGAGAGATGAAATTGATAG
Seq C2 exon
CTTGAACTGTGAGAAGCGAATATTTGAGGTGGTCAATTCTTCTGATCATCCATTCCTTGTGAACATGTTTGCATGTTTCCAAACACCTCATCATGCTTGTTTTGTGATGGAATACACTCCGGGAGGTGATCTTATGATGCGCATACATGAAGATGTTTTTCCAGAGCGCACAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=41.9)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTTTCACTGCATCGCCA
R:
TCACCTCCCGGAGTGTATTCC
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]