MmuEX0035438 @ mm10
Exon Skipping
Gene
ENSMUSG00000026785 | Pkn3
Description
protein kinase N3 [Source:MGI Symbol;Acc:MGI:2388285]
Coordinates
chr2:30086437-30087201:+
Coord C1 exon
chr2:30086437-30086500
Coord A exon
chr2:30086632-30086723
Coord C2 exon
chr2:30087025-30087201
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAACTTTTTCTGGTCCCTAGGTC
3' ss Score
10.3
5' ss Seq
CAGGTGTAT
5' ss Score
3.09
Exon sequences
Seq C1 exon
GAAACCCCCCAGACTTCAAGACTTCCGATGTTTGGCTGTGCTGGGTCGGGGACACTTTGGGAAG
Seq A exon
GTCCTCCTGGTCCAGTACAAAGGAACAGGGAAATACTACGCTATCAAGGCGTTGAAGAAGCAGGAAGTGCTAGGCCGGGATGAGATTGACAG
Seq C2 exon
CCTATACTGTGAGAAGCGGATCCTGGAGACTGTGGGGCGTACAGGGCACCCCTTCCTGCTCTCTCTCCTTGCCTGTCTGCAGACCTCCAGCCATGCCTGCTTTGTTACTGAGTTTCTGCCCGGAGGAGACCTCATGGCGCAGATTCATGAGGATGTCTTTCCTGAGCCCCAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026785-'27-23,'27-22,28-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=59.1)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGATGTTTGGCTGTGCT
R:
CCTCCGGGCAGAAACTCAGTA
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types