HsaEX0047896 @ hg38
Exon Skipping
Gene
ENSG00000160447 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr9:128715172-128716923:+
Coord C1 exon
chr9:128715172-128715235
Coord A exon
chr9:128715369-128715460
Coord C2 exon
chr9:128716747-128716923
Length
92 bp
Sequences
Splice sites
3' ss Seq
CAACCTCTCTCTGGCCCCAGGTC
3' ss Score
10.38
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
GAAACCCCCTCGGCTTCAGGACTTCCGCTGCTTAGCTGTGCTGGGCCGGGGACACTTTGGGAAG
Seq A exon
GTCCTCCTGGTCCAGTTCAAGGGGACAGGGAAATACTACGCCATCAAAGCACTGAAGAAGCAGGAGGTGCTCAGCCGGGACGAGATAGAGAG
Seq C2 exon
CCTGTACTGCGAGAAGCGGATCCTGGAGGCTGTGGGCTGCACAGGGCACCCTTTCCTGCTCTCCCTCCTTGCCTGCTTCCAGACCTCCAGCCATGCCTGCTTTGTGACTGAGTTTGTGCCTGGTGGTGACCTCATGATGCAGATCCACGAGGATGTCTTCCCCGAGCCCCAGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160447_MULTIEX1-5/11=4-6
Average complexity
S
Mappability confidence:
91%=100=91%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(5.0=59.1)
A:
PF0006920=Pkinase=FE(11.5=100)
C2:
PF0006920=Pkinase=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCCGCTGCTTAGCTGTG
R:
ACCAGGCACAAACTCAGTCAC
Band lengths:
169-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development