DreEX6012247 @ danRer10
Exon Skipping
Gene
ENSDARG00000077573 | tmprss13b
Description
transmembrane protease, serine 13b [Source:ZFIN;Acc:ZDB-GENE-090309-2]
Coordinates
chr5:37293561-37295146:-
Coord C1 exon
chr5:37295020-37295146
Coord A exon
chr5:37294662-37294757
Coord C2 exon
chr5:37293561-37293604
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGGTTTGTGTGCTCCACAGGAG
3' ss Score
8.96
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
TGCGGATTGGTACAGGAAATGAATTGCAGGTATTGACCTCTAGGTCTGGGAGTTTTCTTCCAGTCTGCGCACAGGGCTGGAATAAAAACATAGCTGACCAAACCTGCCAACAGCTTGGCTTCAGACA
Seq A exon
GAGTTATTCGTATGGTGTCGTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAG
Seq C2 exon
TTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077573-'4-8,'4-5,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.4=90.7)
A:
PF154941=SRCR_2=PU(47.5=95.0)
C2:
PF154941=SRCR_2=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGATTGGTACAGGAAATGA
R:
GCACTGCAGGGACACACTC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]