BtaEX6058376 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29012311-29015345:-
Coord C1 exon
chr15:29015216-29015345
Coord A exon
chr15:29013285-29013377
Coord C2 exon
chr15:29012311-29012354
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTCCTCCCTTGCAGTGC
3' ss Score
12.4
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TGAGGTTTGACTGGGACAAGTCTCTGCTTAAAGTCTACTCTGGATCCTCCCATCAGTGGCTTCCTGTCTGCAGTGACAGCTGGAATGACTCCTATTCGCAGAAGACCTGCCAGCAGCTGGGTTTCGAGAG
Seq A exon
TGCTTACTGGACAACCAAAGTGGACAATAGGAATGTTGACAGCAGTTTCTCAGTCTCCGAATTTAACTCCACCATCCAGCAGAGCACCTATAG
Seq C2 exon
GTCTGATTGCCCTTCCCAGCAGTATGTTGCTCTACAGTGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.9=88.6)
A:
PF154941=SRCR_2=FE(34.1=100)
C2:
PF154941=SRCR_2=FE(16.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGGGACAAGTCTCTGCT
R:
GGGAACACTGTAGAGCAACAT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]