DreEX6075360 @ danRer10
Exon Skipping
Gene
ENSDARG00000100969 | tmprss13a
Description
transmembrane protease, serine 13a [Source:ZFIN;Acc:ZDB-GENE-090309-3]
Coordinates
chr15:12412677-12413711:-
Coord C1 exon
chr15:12413585-12413711
Coord A exon
chr15:12412807-12412902
Coord C2 exon
chr15:12412677-12412720
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACTTGATTTTTTTCCTCAGGTC
3' ss Score
9.76
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGAGATTCGGTGCAGGAGGAGAGTTGCAGCTCAAAACTGCTCATAATGGTCAGTTCCTTCCGGTATGTTATGAGGGATGGAATATCAGTTACGCTGACCAGATCTGTGAACAGCTAGGCTTTAGACG
Seq A exon
GTCTTATGAATCAAGTGCACTGAATAGCAAGAGCTCCGAAGCCCTTATTTTAGAACCAACATCAGGCTTACTTATACAGGGACTGGCCAATGTCAG
Seq C2 exon
CTCGGGTTGTTTGGACGACAAATCGGTCTCACTTCAGTGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100969-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.4=90.7)
A:
PF154941=SRCR_2=FE(34.8=100)
C2:
PF154941=SRCR_2=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTCGGTGCAGGAGGAGA
R:
AGTGAGACCGATTTGTCGTCC
Band lengths:
159-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]