GgaEX6025849 @ galGal4
Exon Skipping
Gene
ENSGALG00000021273 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr24:5416112-5416549:-
Coord C1 exon
chr24:5416420-5416549
Coord A exon
chr24:5416234-5416326
Coord C2 exon
chr24:5416112-5416155
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCTCACCTCCTCTCTCCCAGCGC
3' ss Score
9.05
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
TGCGGTTCAGCTCCGACCAGTCCTTGCTCCACGTCTACTCCAGCACTGAGAACCAGTGGCTGCCGGTGTGCAGCAGCGCCTGGGACGAGTCCTTCTCTAGAAAGACCTGCCGGCAGCTGGGCTTCCAGAA
Seq A exon
CGCGTCGCAGACAGAATACGTCCCCCTGCACGTCTCTGGCAAGAGCCTCACGGTGGCGGATGAGCGGGACACCATCCAGCAGAGCCTCAACAG
Seq C2 exon
CTCCCAGTGTCTGACGGGCAAATTTGTCTCCCTGCGGTGTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.9=88.6)
A:
PF154941=SRCR_2=FE(34.1=100)
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCTCCGACCAGTCCTT
R:
AGGGAGACAAATTTGCCCGTC
Band lengths:
159-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]