RnoEX6035530 @ rn6
Exon Skipping
Gene
ENSRNOG00000016397 | Tmprss13
Description
transmembrane serine protease 13 [Source:RGD Symbol;Acc:1310872]
Coordinates
chr8:49636932-49640461:+
Coord C1 exon
chr8:49636932-49637061
Coord A exon
chr8:49639443-49639535
Coord C2 exon
chr8:49640418-49640461
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCCTCTTTCCTGCAGTGC
3' ss Score
10.63
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
Exon sequences
Seq C1 exon
TCAGGTTCGACTGGGACAAGTCCCTCCTCAAAGTCTACTCTGGGTCTTCTGGTGAGTGGCTTCCTGTCTGCAGCAGCAGTTGGAACGACACCGACTCCGAGAGGACCTGCCAGCAGCTGGGCTTTGACAG
Seq A exon
TGCCTACCGAACAACTGAGGTGGCCCATAGGGACGTCACCAGCAGCTTCTTACTCTCCGAATACAACTCCACCATCCAGGAAAGCCTCACCAG
Seq C2 exon
GTCGGAATGTCCTTCCCGGCGATACGTCTCCCTCCAGTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016397-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.9=88.6)
A:
PF154941=SRCR_2=FE(34.1=100)
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTTCGACTGGGACAAGT
R:
ACACTGGAGGGAGACGTATCG
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]