HsaEX0066069 @ hg19
Exon Skipping
Gene
ENSG00000137747 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:29808]
Coordinates
chr11:117781422-117784621:-
Coord C1 exon
chr11:117784492-117784621
Coord A exon
chr11:117782483-117782575
Coord C2 exon
chr11:117781422-117781465
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTGCTCCCTTGTAGTGC
3' ss Score
9.46
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
TGAGGTTTGACTGGGACAAGTCTCTGCTTAAAATCTACTCTGGGTCCTCCCATCAGTGGCTTCCCATCTGTAGCAGCAACTGGAATGACTCCTACTCAGAGAAGACCTGCCAGCAGCTGGGTTTCGAGAG
Seq A exon
TGCTCACCGGACAACCGAGGTTGCCCACAGGGATTTTGCCAACAGCTTCTCAATCTTGAGATACAACTCCACCATCCAGGAAAGCCTCCACAG
Seq C2 exon
GTCTGAATGCCCTTCCCAGCGGTATATCTCTCTCCAGTGTTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137747_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(42.9=88.6)
A:
PF154941=SRCR_2=FE(34.1=100)
C2:
PF154941=SRCR_2=FE(16.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTTGACTGGGACAAGTC
R:
ACTGGAGAGAGATATACCGCTGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)