DreEX6013390 @ danRer10
Exon Skipping
Gene
ENSDARG00000098312 | scarb2
Description
scavenger receptor class B, member 2 [Source:ZFIN;Acc:ZDB-GENE-020419-29]
Coordinates
chr5:52206143-52209420:+
Coord C1 exon
chr5:52206143-52206262
Coord A exon
chr5:52206387-52206565
Coord C2 exon
chr5:52209302-52209420
Length
179 bp
Sequences
Splice sites
3' ss Seq
ACCATCTTTATTGGATTTAGATC
3' ss Score
7.09
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TCAGATGAATTGGTGGTCATCTAACCAGAGCAACATGATCAATGGTACTGATGGCAGTGTCTTCCATACCTTCCTGTCCAGAAAAGAGCTCCTCTACATCTTTGCTGCTGATCTCTGCCG
Seq A exon
ATCTATCCATTTGGGTTACGTGAGGGACATGGAAGTGAAGGGCATCCCAGCCTTCCGCTTCGCTCCTCCTTCAGATGTACTAGCTCCTCCAGATGAGAACCCGGCAAATGCTGGCTTCTGCGTGCCTGCTGGAGACTGTCTAGGAAAAGGAGTCCTCAAAGTCAGCGTCTGTCGTCAAG
Seq C2 exon
GTGCACCCATTGTTGTGTCATTCCCTCATTTCTACCAAGCTGATGAGAGGTACATCAATGCCATTGAAGGGATGAATCCAAATGAGGAGGAACATGAAACATACCTCGACATCAACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098312-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.188
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.8=100)
A:
PF0113016=CD36=FE(13.2=100)
C2:
PF0113016=CD36=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAATTGGTGGTCATCTAACC
R:
CGGGTTGATGTCGAGGTATGT
Band lengths:
236-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]