RnoEX6041767 @ rn6
Exon Skipping
Gene
ENSRNOG00000002225 | Scarb2
Description
scavenger receptor class B, member 2 [Source:RGD Symbol;Acc:621882]
Coordinates
chr14:17106302-17109539:+
Coord C1 exon
chr14:17106302-17106421
Coord A exon
chr14:17107039-17107208
Coord C2 exon
chr14:17109421-17109539
Length
170 bp
Sequences
Splice sites
3' ss Seq
GTATCCTTCCTTCCTCTCAGGTC
3' ss Score
11.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCGCTGGACTGGTGGACGACGGACACGTGCAATATGATCAACGGGACAGACGGAGATTCTTTTCACCCATTAATAAGCAAGGATGAGACCCTGTACATCTTCCCATCTGACTTCTGCAG
Seq A exon
GTCCGTCTATATAACTTTCAGTAGCTTTGAGAACGTAGAAGGACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAATTCCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACGCGGGAGTGCTGAACGTCAGCATTTGCAAGAATG
Seq C2 exon
GTGCGCCCATTATCATGTCTTTCCCACACTTTTACCAAGCCGACGAGAAGTTCGTTTCGGCCATAAAAGGCATGCGTCCAAACAAGGAAGAACATGAGTCATTTGTGGACATTAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002225-'6-14,'6-13,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.9=100)
A:
PF0113016=CD36=FE(12.7=100)
C2:
PF0113016=CD36=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTGGTGGACGACGG
R:
AGGATTAATGTCCACAAATGACTCA
Band lengths:
235-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]