MmuEX6018870 @ mm9
Exon Skipping
Gene
ENSMUSG00000029426 | Scarb2
Description
scavenger receptor class B, member 2 [Source:MGI Symbol;Acc:MGI:1196458]
Coordinates
chr5:92880373-92883877:-
Coord C1 exon
chr5:92883758-92883877
Coord A exon
chr5:92883066-92883235
Coord C2 exon
chr5:92880373-92880491
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCCTCCTCCTCTCAGGTC
3' ss Score
12.09
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCGCTGGACTGGTGGACCACAGACACATGCAATATGATTAACGGGACAGACGGAGACTCTTTTCATCCGCTGATAAGCAAGGATGAGGTCCTGTACCTCTTCCCGTCAGACTTGTGCAG
Seq A exon
GTCAGTACATATCACTTTCAGCAGCTTTGAGAACGTAGAAGGACTGCCTGCTTTTCGGTATAAGGTGCCTGCAGAAATACTAGCCAACACCTCCGAAAACGCTGGCTTCTGTATACCCGAGGGAAACTGCATGGACTCAGGGGTGTTGAACATCAGCATCTGCAAGAATG
Seq C2 exon
GTGCACCCATTATCATGTCTTTCCCACACTTTTACCAAGCCGACGAGAAGTTCGTTTCTGCCATAAAAGGCATGCATCCCAACAAGGAAGAGCATGAGTCGTTTGTGGACATTAATCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029426-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(8.9=100)
A:
PF0113016=CD36=FE(12.7=100)
C2:
PF0113016=CD36=FE(8.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACTGGTGGACCACAGA
R:
GGGATTAATGTCCACAAACGACT
Band lengths:
235-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: