HsaEX0056424 @ hg38
Exon Skipping
Gene
ENSG00000138760 | SCARB2
Description
scavenger receptor class B member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:76169867-76175910:-
Coord C1 exon
chr4:76175791-76175910
Coord A exon
chr4:76174144-76174313
Coord C2 exon
chr4:76169867-76169985
Length
170 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTACATCCTAACAGGTC
3' ss Score
10.33
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTCACTTGACTGGTGGATAACAGACAAGTGCAATATGATTAATGGAACAGATGGAGATTCTTTTCACCCACTAATAACCAAAGATGAGGTCCTTTATGTCTTCCCATCTGACTTTTGCAG
Seq A exon
GTCAGTGTATATTACTTTCAGTGACTATGAGAGTGTACAGGGACTGCCTGCCTTTCGGTATAAAGTTCCTGCAGAAATATTAGCCAATACGTCAGACAATGCCGGCTTCTGTATACCTGAGGGAAACTGCCTGGGCTCAGGAGTTCTGAATGTCAGCATCTGCAAGAATG
Seq C2 exon
GTGCACCCATCATTATGTCTTTCCCACACTTTTACCAAGCAGATGAGAGGTTTGTTTCTGCCATAGAAGGCATGCACCCAAATCAGGAAGACCATGAGACATTTGTGGACATTAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138760_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(3.5=7.3),PF0113016=CD36=PU(17.8=97.6)
A:
PF0113016=CD36=PD(3.8=15.5),PF0113016=CD36=PU(30.8=98.3)
C2:
PF0113016=CD36=FE(17.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTTGACTGGTGGATAACAGA
R:
TAATGTCCACAAATGTCTCATGGTCT
Band lengths:
234-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development