GgaEX0017296 @ galGal4
Exon Skipping
Gene
ENSGALG00000011499 | SCARB2
Description
scavenger receptor class B, member 2 [Source:HGNC Symbol;Acc:HGNC:1665]
Coordinates
chr4:49346646-49348551:+
Coord C1 exon
chr4:49346646-49346765
Coord A exon
chr4:49347703-49347881
Coord C2 exon
chr4:49348433-49348551
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTCTTCCTTGCAGATC
3' ss Score
14.4
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTCATTGAACTGGTGGACAACAAAGACTTGTAACATGATCAATGGAACGGATGGGACATCTTTTCATCCACTGATTAGCAAAGATGAGAACATTTATATATTTTCTTCTGATTTCTGCAG
Seq A exon
ATCTCTTTATCTGGTGTATGACAGCTCAGGAAGTGTTGCAGGCGTCCCAACCTACCGCTTTGTGCCCTCCCCTATGGTGTTTGCCAACACCACTGTTAACCCAGACAACGCTGGATTCTGTGTACCACCAGGAAACTGCCCTGGTGCTGGTGTCCTCAATGTCAGCATCTGCAAGCAAG
Seq C2 exon
GTGCTCCCATATTTCTGTCAGCTCCACATTTTTACCAAGCAGATCAAAAGTTTGTAAGTGACATAGAGGGCATGCACCCAACAAAGGAATACCATGAGACATTTGTGGATATCAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011499_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.1=100)
A:
PF0113016=CD36=FE(13.2=100)
C2:
PF0113016=CD36=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTGAACTGGTGGACAACA
R:
TGATATCCACAAATGTCTCATGGT
Band lengths:
234-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]