DreEX6014128 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62717461-62719234:-
Coord C1 exon
chr5:62719026-62719234
Coord A exon
chr5:62717617-62717774
Coord C2 exon
chr5:62717461-62717525
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATGCATTGCTGTGGTTTCAGGTG
3' ss Score
6.4
5' ss Seq
AGGGTATCC
5' ss Score
3.59
Exon sequences
Seq C1 exon
GTGCGTGTGGAACTGCAGTGTGTGCAGCAGGAGCTTCAGGAGCAGCGTGAAGAGGCTGAGAGACAGATGGAGAAAGACAGAGTAGAGCTGCACTCGCTCCAGCAGAAGAGCCTCCACCTGCAACAGCAAACAGAGGCAGCAGTTCAAGAGAGGAGCAGCCTGCAGGAACAGTGCCGAAACCTGGAGGCCAGACGCACACATGCTCAGAG
Seq A exon
GTGTTTGGAAGCAGCAGAGACGAGGACGAGTGAAGCAGAAACTGAGCTTCTTAGAGTGCAGGCAGAGCTGAACAAACTACAGCAGGAGCTAAAACAAACACAAGACCTGCATCTGGAGATCAGCAGAGACAATGTTGCCGTGCAAAAGCGGCATGAGG
Seq C2 exon
AGGAACTGAGCAAACTCAAGAAACAGCTAGTGGACTCTCAGACTCTTGTAGATGAGGTTAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'40-44,'40-43,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.447 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGGAACTGCAGTGTGT
R:
AGTCTGAGAGTCCACTAGCTGT
Band lengths:
250-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]