GgaEX0001731 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8369152-8372771:+
Coord C1 exon
chr17:8369152-8369267
Coord A exon
chr17:8370099-8370256
Coord C2 exon
chr17:8372546-8372771
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATGCATTCACATTTTACAGAGA
3' ss Score
6.79
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AACTGAAACATGTTCTGGAAATGTTGGAGATAGAAAATAATGAACTTCAGGGTTTGAAACTACAACATAATCAAAAGGTCAATGAACTAGAGAAGACTCAGGTTGCAGTTCTAGAA
Seq A exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq C2 exon
ATCCTTTGTAACCTCAAGCAAAATTCAGAACACGAAGGGAAAAAACTGGAAGAAAATACTGCTAAACTCAAAGAACAGAAACTGCTTTTGGAAAAGGAACTCATGGATCAACGTGAGAAACTGGAACAGGCAGTAGCAAAAGTAAGGCTGACAGAAGAAAACAACAGGAAGCTGGAAAAAGAAGCATCTCAATTTGCAGCACTTGAAGAAACTATCAGAAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX2-2/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.194 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
PF127182=Tropomyosin_1=FE(50.0=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGTTCTGGAAATGTTGGAGA
R:
TGCCTGTTCCAGTTTCTCACG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]