RnoEX0022607 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14357470-14362271:+
Coord C1 exon
chr3:14357470-14357687
Coord A exon
chr3:14360912-14361069
Coord C2 exon
chr3:14362198-14362271
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTACTCTGTGGTAGAGT
3' ss Score
5.82
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGGAAGCTAGAGCTAGAGAGTTTGCAGCAGACAGCTCAGCAGCAGAGACGGGAGCTAGAGCGGCAGAGACAACTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCTGAGACCCAGGCACTACAGTCCTGCATCGAATGTCTGAATAAAGAAAAGGAACATCTCCAAGAGCAGTGCGAGAGTTGGGAAAAGAAGTCTTCCCACGCCAAAAG
Seq A exon
AGTTTTAGCAGCTACCGAGGAAAGCAACAACACGGAGCAGTCCAAGCTGGGGCAGCTGGAAGTGAGCGTCAGGAAGCTGCAGCAGGAGCTGGAGCTCCTGAGCCAAGACAAGCTCGCCCTACACAGTGATAGCGCCCAGGAGCAACAGCAGCTGCAAG
Seq C2 exon
ATAAACGGGAAGCCTTAAACTCCCTGCAGAAGGAACTGGAAAATACCCAAGACCATTTGAACCTAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'47-67,'47-64,48-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.260 A=0.685 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTTTGCAGCAGACAGC
R:
TTCCAGTTCCTTCTGCAGGGA
Band lengths:
245-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]