GgaEX0001731 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr17:9074145-9077427:+
Coord C1 exon
chr17:9074145-9074362
Coord A exon
chr17:9074755-9074912
Coord C2 exon
chr17:9077202-9077427
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATGCATTCACATTTTACAGAGA
3' ss Score
6.79
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GAGAAGTTAAAATTGGAGAATATTCAGAGATTATTTCATTGTCAGCAAGGGGAAGTAGACTGGCAGGAACAACTACTTCAGAAGGACCGCCAGGAAAATGAACATCTGGTTTCTCAAATGCGCACTCTGCAAAATAATATTGAGTCTCTGAATAAGGAAAAGCAAAAGCTTGAAGAGGACTGTCAGAGTTTGGAAAAGAAGCTGTCACAAACCAGAAG
Seq A exon
AGACTTGACTGCTACTGAAGACAGCATCAAAACTGCGTTGTCCAATGTAGAAAAAAGGGAATTGGATATTAAAAACCTGCAGCAGGAGATAGATGTACTGAATAAACAAAAAAAGTCACTGCATGGAGACATCACTGTTGTACAAAAAGATCTTCAAG
Seq C2 exon
ATCCTTTGTAACCTCAAGCAAAATTCAGAACACGAAGGGAAAAAACTGGAAGAAAATACTGCTAAACTCAAAGAACAGAAACTGCTTTTGGAAAAGGAACTCATGGATCAACGTGAGAAACTGGAACAGGCAGTAGCAAAAGTAAGGCTGACAGAAGAAAACAACAGGAAGCTGGAAAAAGAAGCATCTCAATTTGCAGCACTTGAAGAAACTATCAGAAAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.342 A=0.259 C2=0.447
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTCTCAAATGCGCACTCT
R:
GCCTGTTCCAGTTTCTCACGT
Band lengths:
243-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]