MmuEX0010884 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35165648-35169315:+
Coord C1 exon
chr2:35165648-35165865
Coord A exon
chr2:35167731-35167888
Coord C2 exon
chr2:35169242-35169315
Length
158 bp
Sequences
Splice sites
3' ss Seq
TCCACTTTATTCTGTGGTAGAGT
3' ss Score
5.66
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGAAACTAGAGCTGGAGAATTTGCAGCAGGCAACGCAGCAGCAGAGAAGGGAGCTAGAGCGGCAGAGACAGCTCCTGGAGAGAGACAGGCGGGAGACAGAGCGAGTGAGGGCAGAGAGCCAGGCCCTGCAGTCCTGCGTCGAATGTCTGAGTAAAGAAAAGGAGGATCTCCAAGGACAGTGCGAGAGCTGGGAAAAGAAGTCTTCCCACGCCCAAAG
Seq A exon
AGTTCTAGCAGCCACAGAAGAAAGCAACAAAATGGAGCAGTCCAACCTTGGGAAGTTGGAACTGAGTGTCAGAAAGCTGCGGCAGGAGCTGGAGCAGCTGAGCCAAGACAAGCTTGCCCTACACAGTGAGGTAGCCGAGGTGCAGCAGCAGCTACAAG
Seq C2 exon
GTAAACAGGAAGCCATAAACTCTCTGCAGGAGGAACTGGATAGCACCCAAGACCATTTGGACCTAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.370 C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAGAAGGGAGCTAGA
R:
GTCCAAATGGTCTTGGGTGCT
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types