DreEX6014131 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62811881-62814565:-
Coord C1 exon
chr5:62814495-62814565
Coord A exon
chr5:62814329-62814423
Coord C2 exon
chr5:62811881-62811963
Length
95 bp
Sequences
Splice sites
3' ss Seq
GATGTTATGTTTCACTTTAGGAC
3' ss Score
9.97
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
TACAAGTGCGTGTTTACTCCCTCAACGAGGAGCTGAGGAAATCTGCACGAACCGTCACTCTTACATTCCAG
Seq A exon
GACCCTAGAGGTGTCAAAGTAGAGATTATTGATATGACTGACATCAATGGAGCAAAACCACTTCTTCCACCATTCAAAATACCTTTAAAGCCAAT
Seq C2 exon
TTATGGAATCTGGAAAATTGTGGCCACATATGCTGACAATTTTGAAACGACTGCTACTGCTGAGTTTGAGGTCAAAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004-'3-5,'3-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF065166=NUP=FE(35.9=100),PF0183514=A2M_N=FE(24.0=100)
A:
PF065166=NUP=PD(3.1=6.2),PF0183514=A2M_N=FE(32.3=100)
C2:
PF0183514=A2M_N=PD(25.0=82.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGTGCGTGTTTACTCCCT
R:
ATTCTTTGACCTCAAACTCAGCAGT
Band lengths:
151-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]