RnoEX6016555 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14210054-14212679:-
Coord C1 exon
chr3:14212609-14212679
Coord A exon
chr3:14211986-14212077
Coord C2 exon
chr3:14210054-14210136
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTTTCTATTCAAAGGAT
3' ss Score
8.44
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAAAGATTAGAGTCTACTCTCTGAGTGACGACTTGAAGCCAGCCAAACGGGAGACTGTCTTAACTTTCGTA
Seq A exon
GATCCCGAAGGAACAGAAGTTGACATCGTAGAAGAAAATGATTATACTGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCCAA
Seq C2 exon
GTATGGTGTATGGACAATTAAAGCTAAATATAAGAAGGATTTTACAACGACTGGAACTGCATACTTTGAAGTTAAAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
PF0183514=A2M_N=FE(31.6=100)
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTACTCTCTGAGTGACGACT
R:
AACTTCAAAGTATGCAGTTCCAGT
Band lengths:
135-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]