GgaEX0001805 @ galGal3
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
NA
Coordinates
chr17:9042144-9043904:-
Coord C1 exon
chr17:9043834-9043904
Coord A exon
chr17:9043252-9043343
Coord C2 exon
chr17:9042144-9042226
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTTGTGATTTCAAGGAT
3' ss Score
8.27
5' ss Seq
CAAGTAAAT
5' ss Score
4.44
Exon sequences
Seq C1 exon
TGAAAGTCAGGGTTTACTCTCTGAACGAAGAACTGCAGCCAGCTCGGCGAGAAACTGTCCTAACTGTTGTG
Seq A exon
GATCCAGATGGAGTAAAAGTGGATATCATAGAAGAAAACGACTTTACTGGAATAGTTTCTTTTCCTGATTTCAAGATTCCTCCTAATCCCAA
Seq C2 exon
GTATGGAATTTGGAAGATTGAAGCAAAGTACAAGAAGAATTTCATAACTTCAGCTGTTGCAAAATTTGAAGTTAAAGAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
PF0183514=A2M_N=FE(31.6=100)
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGTCAGGGTTTACTCTCTGA
R:
ACTTCAAATTTTGCAACAGCTGA
Band lengths:
143-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]