MmuEX6100761 @ mm9
Exon Skipping
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34898708-34901460:-
Coord C1 exon
chr2:34901390-34901460
Coord A exon
chr2:34900783-34900874
Coord C2 exon
chr2:34898708-34898790
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCATCGGTTTCTATTCAAAGGAC
3' ss Score
6.46
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAAAGATCAGAGTCTATTCTCTGGGTGACGACTTGAAGCCAGCCAAACGGGAGACTGTCTTAACTTTCATA
Seq A exon
GACCCCGAAGGATCAGAAGTTGACATTGTAGAAGAAAATGATTACACCGGAATTATCTCTTTTCCTGACTTCAAGATTCCATCTAATCCCAA
Seq C2 exon
GTATGGTGTTTGGACAATTAAAGCTAACTATAAGAAGGATTTTACAACAACTGGAACTGCATACTTTGAAATTAAAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
PF0183514=A2M_N=FE(31.6=100)
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTATTCTCTGGGTGACGA
R:
ATTTCAAAGTATGCAGTTCCAGTTGT
Band lengths:
135-227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: