HsaEX6062802 @ hg38
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:121032113-121037951:-
Coord C1 exon
chr9:121037881-121037951
Coord A exon
chr9:121034803-121034894
Coord C2 exon
chr9:121032113-121032195
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTTTTTATTTACAGGAT
3' ss Score
11.31
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
TAAAAGTTAGAGTTTATTCGTTGAATGACGACTTGAAGCCAGCCAAAAGAGAAACTGTCTTAACTTTCATA
Seq A exon
GATCCTGAAGGATCAGAAGTTGACATGGTAGAAGAAATTGATCATATTGGAATTATCTCTTTTCCTGACTTCAAGATTCCGTCTAATCCTAG
Seq C2 exon
ATATGGTATGTGGACGATCAAGGCTAAATATAAAGAGGACTTTTCAACAACTGGAACCGCATATTTTGAAGTTAAAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-'8-7,'8-5,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
PF0183514=A2M_N=FE(31.6=100)
C2:
PF0183514=A2M_N=PD(25.3=82.8)
Main Skipping Isoform:
ENST00000223642fB10999
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTAGAGTTTATTCGTTGAATGACG
R:
TTTAACTTCAAAATATGCGGTTCCA
Band lengths:
143-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains