DreEX6014148 @ danRer10
Exon Skipping
Gene
ENSDARG00000089461 | ciz1b
Description
cdkn1a interacting zinc finger protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2933]
Coordinates
chr5:62978311-62980965:-
Coord C1 exon
chr5:62980854-62980965
Coord A exon
chr5:62979744-62979819
Coord C2 exon
chr5:62978311-62978399
Length
76 bp
Sequences
Splice sites
3' ss Seq
TGCACTGAATAAATCCAAAGGTA
3' ss Score
3.27
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
GAGGCTTCAGTGCAAAATATAAACAAGAAGAAGGAGAACATGCATAATGTAGCTGGGAAAAGTAATGGGCAGCCGAGGAAAGCGAACATGAATTCAGACGTGAGGAGAGCGG
Seq A exon
GTACCACTGGACAAATTCCTCATTCCTCAGTCCCAGAACAAGCAGAGCCACCTTTGAAAAAGCACAGAGGTCAGAG
Seq C2 exon
ACTGAATGAACAAGACAATGAGTCTGCTAATGGAGACAAGACTCAGCATTCACCAAAAGAAAACTCTGCCAGCATTTCAGACCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089461-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAAGAAGGAGAACATGCA
R:
GGTCTGAAATGCTGGCAGAGT
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]