MmuEX6100544 @ mm10
Exon Skipping
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32372298-32375572:+
Coord C1 exon
chr2:32372298-32372495
Coord A exon
chr2:32374342-32374466
Coord C2 exon
chr2:32375485-32375572
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTGGTGCATTCCTGCTGCAGGAG
3' ss Score
7.82
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCCTTTAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCTACCTCTGCCACCCCTGCCATTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCAGCAGCAGCCAGCAG
Seq A exon
GAGTTCCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAATACAACACTCGAGCCAGACCTGCCTGCTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAAAGAAGCGGA
Seq C2 exon
AGATCCTCCGCCCAAACGCTGGTGCAACACCTGCCAGGTGTACTACGTGGGAGACTTGATCCAGCACCGTAGGACACAGGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-'30-50,'30-41,32-50
Average complexity
S
Mappability confidence:
94%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=0.536 C2=0.126
Domain overlap (PFAM):
C1:
PF127562=zf-C2H2_2=PU(50.0=39.4)
A:
PF127562=zf-C2H2_2=PD(46.2=57.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGAAGGTCACCATCCT
R:
TCCTACGGTGCTGGATCAAGT
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types