GgaEX6015065 @ galGal3
Exon Skipping
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5717960-5719112:+
Coord C1 exon
chr17:5717960-5718142
Coord A exon
chr17:5718479-5718609
Coord C2 exon
chr17:5719028-5719112
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTAACCTTTTCTTAGAAT
3' ss Score
7.63
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGTTGAGCTCTGGAGGTTCACTGAAAGTGACTATCCAGCAGAGCAGTGAGAGCAGAGCTATCAGTACAACAGCTCTGAAACCAGGGCAGTGGACCTGCGAGATGGGCACAGCTGATGCCAGCCCTGAATCAGCCCTTAAATTCTACTGTTATATCTGCAAGACCAACTGCTGCAATCAGCAG
Seq A exon
AATTTCCAAGCCCACATGGCTGGAATTCAGCACCAGCAGCGACTTGGGGAGATTCAGCACATGAGCAATGTTTGTTTTGTTTCACTACTGCCTATGGTGAAGGAGCAGAAGTTGCTGGCAGAGAAAGATGG
Seq C2 exon
AGAGACCCAGCAGCGGTGGTGTAACACTTGTCAGATACACTTCACAGGGGATCTGATCAAACATCGCAGGACCCAAGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789-'4-9,'4-7,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.062 C2=0.033
Domain overlap (PFAM):
C1:
PF128742=zf-met=PU(52.0=48.1)
A:
PF128742=zf-met=PD(40.0=22.7),PF049887=AKAP95=FE(45.7=100)
C2:
PF049887=AKAP95=FE(11.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTCTGGAGGTTCACTGA
R:
CTTGGGTCCTGCGATGTTTGA
Band lengths:
256-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]