HsaEX6063178 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130932299-130940042:-
Coord C1 exon
chr9:130939845-130940042
Coord A exon
chr9:130938630-130938754
Coord C2 exon
chr9:130932299-130932386
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCCCTCCTGCTGCAGGAG
3' ss Score
10.28
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
GTATGGGGCGCCGGGGGCTCCCTGAAGGTCACCATTCTGCAGAGCAGTGACAGCCGGGCCTTTAGCACTGTACCCCTGACACCTGTCCCCCGCCCCAGTGACTCCGTCTCCTCCACCCCTGCGGCTACCAGCACTCCCTCTAAGCAGGCCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCTCCAGCCAGCAG
Seq A exon
GAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGA
Seq C2 exon
GGAGCCTCCACCAAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAACACCGCAGGACACAGGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'36-34,'36-32,37-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.409 A=0.479 C2=0.189
Domain overlap (PFAM):
C1:
PF127562=zf-C2H2_2=PU(55.9=50.0)
A:
PF127562=zf-C2H2_2=PD(40.7=57.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCTGAAGGTCACCATTC
R:
GGATCAGGTCCCCCATGTAGT
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)