BtaEX6046347 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98810170-98813770:-
Coord C1 exon
chr11:98813573-98813770
Coord A exon
chr11:98812699-98812823
Coord C2 exon
chr11:98810170-98810257
Length
125 bp
Sequences
Splice sites
3' ss Seq
CTCGCTCCCGCCTGCTGCAGGAG
3' ss Score
8.48
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTGTGGGGGGCTGGGGGATCCCTGAAGGTCACCATCCTGCAGAGCAGCGACAGCCGGGCCTTTAGCACCGTACCCCTCACACCCGGTCCCCGGGCCAGCGACTCTACCTCTGCCACCCCTGCGGCGGCCAGCACACCCTCTAAGCAGGCCCTTCAGTTCTTCTGCTACATCTGCAAGGCCGGCTGCAGTAGCCAGCAG
Seq A exon
GAGTTCCAGGAACACATGTCGGGAGCCCAGCACCAGCAGCGGCTCGGTGAGATCCAGCACATGAGCCAAGCCTTCCTGCTGTCCCTGCTGCCTGTGCCCCGGGACGTCCTGGAGAGAGAGGACGA
Seq C2 exon
AGAGCCTCCACCCAGGCGCTGGTGCAACACCTGCCAGCTCTACTACATGGGGGACCTGATCCAGCACCGCAGGACGCAGGACCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274-'13-23,'13-21,14-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.476 C2=0.117
Domain overlap (PFAM):
C1:
PF121713=zf-C2H2_jaz=PU(51.9=21.2)
A:
PF121713=zf-C2H2_jaz=PD(40.7=26.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGAAGGTCACCATCCTG
R:
GGATCAGGTCCCCCATGTAGT
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]